OpenCTEval Benchmark Datasets
Collection
A collection that supports the development of the OpenCTEval Benchmark, a medical dataset catered towards LLM reasoning over Clinical Trial (CT) data • 15 items • Updated
• 1
id int64 0 13k | prompt listlengths 1 1 | completion listlengths 1 1 | Label stringclasses 3 values |
|---|---|---|---|
0 | [
{
"role": "user",
"content": "You are a medical expert tasked with determining wether a Clinical Trial is relevant to a specific Patient Description. Your task is to evaluate the relevance of a Clinical Trial based on the provided information, including the **Clinical Trial Title:**, **Clinical Trial Summar... | [
{
"role": "assistant",
"content": "**Answer:** not relevant"
}
] | not relevant |
1 | [
{
"role": "user",
"content": "You are a medical expert tasked with determining wether a Clinical Trial is relevant to a specific Patient Description. Your task is to evaluate the relevance of a Clinical Trial based on the provided information, including the **Clinical Trial Title:**, **Clinical Trial Summar... | [
{
"role": "assistant",
"content": "**Answer:** not relevant"
}
] | not relevant |
2 | [
{
"role": "user",
"content": "You are a medical expert tasked with determining wether a Clinical Trial is relevant to a specific Patient Description. Your task is to evaluate the relevance of a Clinical Trial based on the provided information, including the **Clinical Trial Title:**, **Clinical Trial Summar... | [
{
"role": "assistant",
"content": "**Answer:** not relevant"
}
] | not relevant |
3 | [
{
"role": "user",
"content": "You are a medical expert tasked with determining wether a Clinical Trial is relevant to a specific Patient Description. Your task is to evaluate the relevance of a Clinical Trial based on the provided information, including the **Clinical Trial Title:**, **Clinical Trial Summar... | [
{
"role": "assistant",
"content": "**Answer:** not relevant"
}
] | not relevant |
4 | [
{
"role": "user",
"content": "You are a medical expert tasked with determining wether a Clinical Trial is relevant to a specific Patient Description. Your task is to evaluate the relevance of a Clinical Trial based on the provided information, including the **Clinical Trial Title:**, **Clinical Trial Summar... | [
{
"role": "assistant",
"content": "**Answer:** not relevant"
}
] | not relevant |
5 | [
{
"role": "user",
"content": "You are a medical expert tasked with determining wether a Clinical Trial is relevant to a specific Patient Description. Your task is to evaluate the relevance of a Clinical Trial based on the provided information, including the **Clinical Trial Title:**, **Clinical Trial Summar... | [
{
"role": "assistant",
"content": "**Answer:** not relevant"
}
] | not relevant |
6 | [
{
"role": "user",
"content": "You are a medical expert tasked with determining wether a Clinical Trial is relevant to a specific Patient Description. Your task is to evaluate the relevance of a Clinical Trial based on the provided information, including the **Clinical Trial Title:**, **Clinical Trial Summar... | [
{
"role": "assistant",
"content": "**Answer:** not relevant"
}
] | not relevant |
7 | [
{
"role": "user",
"content": "You are a medical expert tasked with determining wether a Clinical Trial is relevant to a specific Patient Description. Your task is to evaluate the relevance of a Clinical Trial based on the provided information, including the **Clinical Trial Title:**, **Clinical Trial Summar... | [
{
"role": "assistant",
"content": "**Answer:** not relevant"
}
] | not relevant |
8 | [
{
"role": "user",
"content": "You are a medical expert tasked with determining wether a Clinical Trial is relevant to a specific Patient Description. Your task is to evaluate the relevance of a Clinical Trial based on the provided information, including the **Clinical Trial Title:**, **Clinical Trial Summar... | [
{
"role": "assistant",
"content": "**Answer:** not relevant"
}
] | not relevant |
9 | [
{
"role": "user",
"content": "You are a medical expert tasked with determining wether a Clinical Trial is relevant to a specific Patient Description. Your task is to evaluate the relevance of a Clinical Trial based on the provided information, including the **Clinical Trial Title:**, **Clinical Trial Summar... | [
{
"role": "assistant",
"content": "**Answer:** not relevant"
}
] | not relevant |
10 | [
{
"role": "user",
"content": "You are a medical expert tasked with determining wether a Clinical Trial is relevant to a specific Patient Description. Your task is to evaluate the relevance of a Clinical Trial based on the provided information, including the **Clinical Trial Title:**, **Clinical Trial Summar... | [
{
"role": "assistant",
"content": "**Answer:** not relevant"
}
] | not relevant |
11 | [
{
"role": "user",
"content": "You are a medical expert tasked with determining wether a Clinical Trial is relevant to a specific Patient Description. Your task is to evaluate the relevance of a Clinical Trial based on the provided information, including the **Clinical Trial Title:**, **Clinical Trial Summar... | [
{
"role": "assistant",
"content": "**Answer:** not relevant"
}
] | not relevant |
12 | [
{
"role": "user",
"content": "You are a medical expert tasked with determining wether a Clinical Trial is relevant to a specific Patient Description. Your task is to evaluate the relevance of a Clinical Trial based on the provided information, including the **Clinical Trial Title:**, **Clinical Trial Summar... | [
{
"role": "assistant",
"content": "**Answer:** not relevant"
}
] | not relevant |
13 | [
{
"role": "user",
"content": "You are a medical expert tasked with determining wether a Clinical Trial is relevant to a specific Patient Description. Your task is to evaluate the relevance of a Clinical Trial based on the provided information, including the **Clinical Trial Title:**, **Clinical Trial Summar... | [
{
"role": "assistant",
"content": "**Answer:** not relevant"
}
] | not relevant |
14 | [
{
"role": "user",
"content": "You are a medical expert tasked with determining wether a Clinical Trial is relevant to a specific Patient Description. Your task is to evaluate the relevance of a Clinical Trial based on the provided information, including the **Clinical Trial Title:**, **Clinical Trial Summar... | [
{
"role": "assistant",
"content": "**Answer:** not relevant"
}
] | not relevant |
15 | [
{
"role": "user",
"content": "You are a medical expert tasked with determining wether a Clinical Trial is relevant to a specific Patient Description. Your task is to evaluate the relevance of a Clinical Trial based on the provided information, including the **Clinical Trial Title:**, **Clinical Trial Summar... | [
{
"role": "assistant",
"content": "**Answer:** not relevant"
}
] | not relevant |
16 | [
{
"role": "user",
"content": "You are a medical expert tasked with determining wether a Clinical Trial is relevant to a specific Patient Description. Your task is to evaluate the relevance of a Clinical Trial based on the provided information, including the **Clinical Trial Title:**, **Clinical Trial Summar... | [
{
"role": "assistant",
"content": "**Answer:** not relevant"
}
] | not relevant |
17 | [
{
"role": "user",
"content": "You are a medical expert tasked with determining wether a Clinical Trial is relevant to a specific Patient Description. Your task is to evaluate the relevance of a Clinical Trial based on the provided information, including the **Clinical Trial Title:**, **Clinical Trial Summar... | [
{
"role": "assistant",
"content": "**Answer:** not relevant"
}
] | not relevant |
18 | [
{
"role": "user",
"content": "You are a medical expert tasked with determining wether a Clinical Trial is relevant to a specific Patient Description. Your task is to evaluate the relevance of a Clinical Trial based on the provided information, including the **Clinical Trial Title:**, **Clinical Trial Summar... | [
{
"role": "assistant",
"content": "**Answer:** not relevant"
}
] | not relevant |
19 | [
{
"role": "user",
"content": "You are a medical expert tasked with determining wether a Clinical Trial is relevant to a specific Patient Description. Your task is to evaluate the relevance of a Clinical Trial based on the provided information, including the **Clinical Trial Title:**, **Clinical Trial Summar... | [
{
"role": "assistant",
"content": "**Answer:** not relevant"
}
] | not relevant |
20 | [
{
"role": "user",
"content": "You are a medical expert tasked with determining wether a Clinical Trial is relevant to a specific Patient Description. Your task is to evaluate the relevance of a Clinical Trial based on the provided information, including the **Clinical Trial Title:**, **Clinical Trial Summar... | [
{
"role": "assistant",
"content": "**Answer:** not relevant"
}
] | not relevant |
21 | [
{
"role": "user",
"content": "You are a medical expert tasked with determining wether a Clinical Trial is relevant to a specific Patient Description. Your task is to evaluate the relevance of a Clinical Trial based on the provided information, including the **Clinical Trial Title:**, **Clinical Trial Summar... | [
{
"role": "assistant",
"content": "**Answer:** not relevant"
}
] | not relevant |
22 | [
{
"role": "user",
"content": "You are a medical expert tasked with determining wether a Clinical Trial is relevant to a specific Patient Description. Your task is to evaluate the relevance of a Clinical Trial based on the provided information, including the **Clinical Trial Title:**, **Clinical Trial Summar... | [
{
"role": "assistant",
"content": "**Answer:** not relevant"
}
] | not relevant |
23 | [
{
"role": "user",
"content": "You are a medical expert tasked with determining wether a Clinical Trial is relevant to a specific Patient Description. Your task is to evaluate the relevance of a Clinical Trial based on the provided information, including the **Clinical Trial Title:**, **Clinical Trial Summar... | [
{
"role": "assistant",
"content": "**Answer:** not relevant"
}
] | not relevant |
24 | [
{
"role": "user",
"content": "You are a medical expert tasked with determining wether a Clinical Trial is relevant to a specific Patient Description. Your task is to evaluate the relevance of a Clinical Trial based on the provided information, including the **Clinical Trial Title:**, **Clinical Trial Summar... | [
{
"role": "assistant",
"content": "**Answer:** not relevant"
}
] | not relevant |
25 | [
{
"role": "user",
"content": "You are a medical expert tasked with determining wether a Clinical Trial is relevant to a specific Patient Description. Your task is to evaluate the relevance of a Clinical Trial based on the provided information, including the **Clinical Trial Title:**, **Clinical Trial Summar... | [
{
"role": "assistant",
"content": "**Answer:** not relevant"
}
] | not relevant |
26 | [
{
"role": "user",
"content": "You are a medical expert tasked with determining wether a Clinical Trial is relevant to a specific Patient Description. Your task is to evaluate the relevance of a Clinical Trial based on the provided information, including the **Clinical Trial Title:**, **Clinical Trial Summar... | [
{
"role": "assistant",
"content": "**Answer:** not relevant"
}
] | not relevant |
27 | [
{
"role": "user",
"content": "You are a medical expert tasked with determining wether a Clinical Trial is relevant to a specific Patient Description. Your task is to evaluate the relevance of a Clinical Trial based on the provided information, including the **Clinical Trial Title:**, **Clinical Trial Summar... | [
{
"role": "assistant",
"content": "**Answer:** not relevant"
}
] | not relevant |
28 | [
{
"role": "user",
"content": "You are a medical expert tasked with determining wether a Clinical Trial is relevant to a specific Patient Description. Your task is to evaluate the relevance of a Clinical Trial based on the provided information, including the **Clinical Trial Title:**, **Clinical Trial Summar... | [
{
"role": "assistant",
"content": "**Answer:** not relevant"
}
] | not relevant |
29 | [
{
"role": "user",
"content": "You are a medical expert tasked with determining wether a Clinical Trial is relevant to a specific Patient Description. Your task is to evaluate the relevance of a Clinical Trial based on the provided information, including the **Clinical Trial Title:**, **Clinical Trial Summar... | [
{
"role": "assistant",
"content": "**Answer:** not relevant"
}
] | not relevant |
30 | [
{
"role": "user",
"content": "You are a medical expert tasked with determining wether a Clinical Trial is relevant to a specific Patient Description. Your task is to evaluate the relevance of a Clinical Trial based on the provided information, including the **Clinical Trial Title:**, **Clinical Trial Summar... | [
{
"role": "assistant",
"content": "**Answer:** not relevant"
}
] | not relevant |
31 | [
{
"role": "user",
"content": "You are a medical expert tasked with determining wether a Clinical Trial is relevant to a specific Patient Description. Your task is to evaluate the relevance of a Clinical Trial based on the provided information, including the **Clinical Trial Title:**, **Clinical Trial Summar... | [
{
"role": "assistant",
"content": "**Answer:** not relevant"
}
] | not relevant |
32 | [
{
"role": "user",
"content": "You are a medical expert tasked with determining wether a Clinical Trial is relevant to a specific Patient Description. Your task is to evaluate the relevance of a Clinical Trial based on the provided information, including the **Clinical Trial Title:**, **Clinical Trial Summar... | [
{
"role": "assistant",
"content": "**Answer:** not relevant"
}
] | not relevant |
33 | [
{
"role": "user",
"content": "You are a medical expert tasked with determining wether a Clinical Trial is relevant to a specific Patient Description. Your task is to evaluate the relevance of a Clinical Trial based on the provided information, including the **Clinical Trial Title:**, **Clinical Trial Summar... | [
{
"role": "assistant",
"content": "**Answer:** not relevant"
}
] | not relevant |
34 | [
{
"role": "user",
"content": "You are a medical expert tasked with determining wether a Clinical Trial is relevant to a specific Patient Description. Your task is to evaluate the relevance of a Clinical Trial based on the provided information, including the **Clinical Trial Title:**, **Clinical Trial Summar... | [
{
"role": "assistant",
"content": "**Answer:** not relevant"
}
] | not relevant |
35 | [
{
"role": "user",
"content": "You are a medical expert tasked with determining wether a Clinical Trial is relevant to a specific Patient Description. Your task is to evaluate the relevance of a Clinical Trial based on the provided information, including the **Clinical Trial Title:**, **Clinical Trial Summar... | [
{
"role": "assistant",
"content": "**Answer:** not relevant"
}
] | not relevant |
36 | [
{
"role": "user",
"content": "You are a medical expert tasked with determining wether a Clinical Trial is relevant to a specific Patient Description. Your task is to evaluate the relevance of a Clinical Trial based on the provided information, including the **Clinical Trial Title:**, **Clinical Trial Summar... | [
{
"role": "assistant",
"content": "**Answer:** not relevant"
}
] | not relevant |
End of preview. Expand
in Data Studio
TREC Precision Medicine (2017, 2018 and 2019)
| Links | |
|---|---|
| Homepage: | TREC |
| Paper: | 2017 / 2018 / 2019 / 2020 |
| Contact (Original Authors): | Kirk Roberts (Kirk.Roberts@uth.tmc.edu ) |
| Contact (Curator): | Artur Guimarães (artur.guimas@gmail.com) |
Dataset Summary
This track focused on oncologists looking for evidence-based treatment literature and clinical trials.
Data Instances
Source Format
{
"query_id":"1",
"disease":"melanoma",
"gene":"BRAF (E586K)",
"demographic":"64-year-old female",
"doc_id":"NCT00001685",
"relevance":0,
"iteration":"0"
}
Data Fields
Source Format
TO:DO
Data Splits
TO:DO
Additional Information
Dataset Curators
Original Paper
- Kirk Roberts - School of Biomedical Informatics, The University of Texas Health Science Center, Houston, TX Lister Hill National Center for Biomedical Communications, U.S. National Library of Medicine, Bethesda, MD
- Dina Demner-Fushman - Lister Hill National Center for Biomedical Communications, U.S. National Library of Medicine, Bethesda, MD
- Ellen M. Voorhees - Information Technology Laboratory, National Institute of Standards and Technology, Gaithersburg, MD
- William R. Hersh and Steven Bedrick - Department of Medical Informatics & Clinical Epidemiology, Oregon Health and Science University, Portland, OR
- Alexander J. Lazar - Departments of Pathology & Genomic Medicine, The University of Texas MD Anderson Cancer Center, Houston, TX
- Shubham Pant - Department of Investigational Cancer Therapeutics, The University of Texas MD Anderson Cancer Center, Houston, TX
Huggingface Curator
- Artur Guimarães (artur.guimas@gmail.com) - INESC-ID / University of Lisbon - Instituto Superior Técnico
Licensing Information
Citation Information
@inproceedings{roberts2017overview,
title={Overview of the TREC 2017 precision medicine track},
author={Roberts, Kirk and Demner-Fushman, Dina and Voorhees, Ellen M and Hersh, William R and Bedrick, Steven and Lazar, Alexander J and Pant, Shubham},
booktitle={The... text REtrieval conference: TREC. Text REtrieval Conference},
volume={26},
pages={https--trec},
year={2017}
}
@inproceedings{roberts2018overview,
title={Overview of the TREC 2018 Precision Medicine Track},
author={Roberts, Kirk and Demner-Fushman, Dina and Voorhees, Ellen M and Hersh, William R and Bedrick, Steven and Lazar, Alexander J},
booktitle={27th Text REtrieval Conference, TREC 2018},
year={2018}
}
@inproceedings{roberts2019overview,
title={Overview of the TREC 2019 precision medicine track},
author={Roberts, Kirk and Demner-Fushman, Dina and Voorhees, Ellen M and Hersh, William R and Bedrick, Steven and Lazar, Alexander J and Pant, Shubham and Meric-Bernstam, Funda},
booktitle={The... Text REtrieval Conference: TREC. Text REtrieval Conference},
volume={1250},
pages={https--trec},
year={2019}
}
@inproceedings{roberts2020overview,
title={Overview of the TREC 2020 precision medicine track},
author={Roberts, Kirk and Demner-Fushman, Dina and Voorhees, Ellen M and Bedrick, Steven and Hersh, William R},
booktitle={The... text REtrieval conference: TREC. Text REtrieval Conference},
volume={1266},
pages={https--trec},
year={2020}
}
Contributions
Thanks to araag2 for adding this dataset.
- Downloads last month
- 26
Size of downloaded dataset files:
205 MB
Size of the auto-converted Parquet files:
205 MB
Number of rows:
120,609